Scaffold Ga0335052_0000374

Overview

Basic Information

• Taxon OID: 3300034279
• Scaffold ID: Ga0335052_0000374
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2014-rr0163
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 27620
• Total Scaffold Genes: 57
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 52 (91.23%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C403 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000368	Metagenome / Metatranscriptome	1223	Y
F018164	Metagenome / Metatranscriptome	236	Y
F060854	Metagenome / Metatranscriptome	132	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335052_0000374_1696_1950	F018164	AGG	MAKIFRGPTMRIKLGLSNDLWFVSYPWGKTVVKDNGTWKTIVSPQDSSLDDYQKVLRGGYDNPITDAEAAELTAAGYGEYIVEL
Ga0335052_0000374_20034_20366	F060854	AGGA	MARPRPTEIKLVANLLDPEGSASESASELAVEIIEALDIARGKRDSYILIAQLARWAPVQAWGEFNTQLQAEKFVKHLVAVDIEGDGGRALIVHLEQPDKLLERIGELKK
Ga0335052_0000374_9028_9216	F000368	AGGAG	MNAKFQAAALSWFRAAAASAIALYLAGQTDFKVLGTAALTGFLGPVLKWLDGSSTDFGRGAE