Basic Information | |
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Taxon OID | 3300034279 Open in IMG/M |
Scaffold ID | Ga0335052_0000289 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2014-rr0163 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 30971 |
Total Scaffold Genes | 79 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 21 (26.58%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F050364 | Metagenome / Metatranscriptome | 145 | Y |
F064721 | Metagenome / Metatranscriptome | 128 | N |
F086587 | Metagenome | 110 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0335052_0000289_12829_13107 | F064721 | N/A | MTFKQKIVSNVIVGGLFRISEFIANIIMGLMRLFKTRKPHYLYVYLKYEQDFLYPLAEKICYCLGLKKEWDVHQEGLDRLHKLIFGEDAEKD |
Ga0335052_0000289_21329_21562 | F050364 | N/A | MIPKKYATYQNTKVGDKIRFRESTIHWFINRIENAKKLVSGEIYTVKKISVASSSTGVILEETNEEVELTWFDIIEN |
Ga0335052_0000289_23672_23944 | F086587 | N/A | MEKNNTFEEYKYAIQHKPTKKWVNFKNDDLELSATAIELVDFKDCLIVAARDYLELFLKRSSFNNIPNYGNENFLEFELVKIKTTYTIEK |
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