NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335052_0000289

Scaffold Ga0335052_0000289


Overview

Basic Information
Taxon OID3300034279 Open in IMG/M
Scaffold IDGa0335052_0000289 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2014-rr0163
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)30971
Total Scaffold Genes79 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (26.58%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F050364Metagenome / Metatranscriptome145Y
F064721Metagenome / Metatranscriptome128N
F086587Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0335052_0000289_12829_13107F064721N/AMTFKQKIVSNVIVGGLFRISEFIANIIMGLMRLFKTRKPHYLYVYLKYEQDFLYPLAEKICYCLGLKKEWDVHQEGLDRLHKLIFGEDAEKD
Ga0335052_0000289_21329_21562F050364N/AMIPKKYATYQNTKVGDKIRFRESTIHWFINRIENAKKLVSGEIYTVKKISVASSSTGVILEETNEEVELTWFDIIEN
Ga0335052_0000289_23672_23944F086587N/AMEKNNTFEEYKYAIQHKPTKKWVNFKNDDLELSATAIELVDFKDCLIVAARDYLELFLKRSSFNNIPNYGNENFLEFELVKIKTTYTIEK
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