NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335052_0000255

Scaffold Ga0335052_0000255


Overview

Basic Information
Taxon OID3300034279 Open in IMG/M
Scaffold IDGa0335052_0000255 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2014-rr0163
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)33278
Total Scaffold Genes68 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)58 (85.29%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023036Metagenome211Y
F025644Metagenome200Y
F031754Metagenome / Metatranscriptome181Y
F051706Metagenome143N

Sequences

Protein IDFamilyRBSSequence
Ga0335052_0000255_13697_13957F023036GGAGMNNPTVNVNTTQPADWAEFIRNAASVEGIELSAFYGFAAVDRAIRVMQMDPAKAWATLSERKRGRPARYDPAKAPAVKRKRGRANG
Ga0335052_0000255_19853_20080F025644GAGGMLRQWQPTTRGGFWVRNIEPVDREAEFHDLRGQVGNYSNEPPSEDPADWHWETWRSDGRYMVGKESVFDLIEVQE
Ga0335052_0000255_28645_29082F031754AGGMNEKGGPVIMVVLLCVLFWFCSEPAKEPTQCDLMDSTPLIQEVAKVEFVASPKEPDPMPSPSDKPHEAVKREILVFLAPKDQKCEPCDRWKRCEMQRFIDAKWDVAIFDEPHNYGRTPTFEVKSGDKKATLTGYTTLEQAAEAVR
Ga0335052_0000255_7364_8047F051706AGGVAQKDIGYYSPTLAKRIRDNSFAWERERAAKPIEIRQSTPDPIYFYNASTETIPAYGCIQKVGMETIDGQSIIKVDRPIDYTASVMGPFLLNGPAEVAANGLGTAQWGPIFRAKKDSATYTTGTRMGPVESSFSLSKGCLFTFIGDDEQEDDLIKVIACETPLLAVAGSGIGANSSGTVTAKQPASGNWTAGTITYTAWNPTGVAIASAASVLLFPVDAKWLAVELC

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