Scaffold Ga0335049_0366551

Overview

Basic Information

• Taxon OID: 3300034272
• Scaffold ID: Ga0335049_0366551
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Jul2017-rr0156
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 954
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F001781	Metagenome / Metatranscriptome	635	Y
F037727	Metagenome / Metatranscriptome	167	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335049_0366551_383_631	F000263	N/A	MVNADVPGIDIMHGELKNLMLIAEQDLKEALEQEERSEEAMDSMVRTECEGRLDTLVELYKLTYDLSFAIGVREENKKDGHL
Ga0335049_0366551_666_908	F037727	N/A	MISYKAYGQKGISIMPTKSSRFLEYIKLHRISLIQDNENQIQDSSDPDWNFLQGQIIATEHLLSVAEGIMESTNERYINE
Ga0335049_0366551_72_386	F001781	AGGA	MKPDDKDKLNKCLDILDTTDLGLSMVWLWTWSTIKSFMQDDTFIMKKTEDEMWDCLCEAVEAGMGFSLEYGAEQHYEDVMEWMLNREYMVDSMFEEEEAEDEDE