NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335049_0230279

Scaffold Ga0335049_0230279


Overview

Basic Information
Taxon OID3300034272 Open in IMG/M
Scaffold IDGa0335049_0230279 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Jul2017-rr0156
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1285
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F047014Metagenome / Metatranscriptome150Y
F057882Metagenome / Metatranscriptome135N
F101040Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0335049_0230279_1102_1284F047014N/AKIIEAKKDKEAEHHCAKIINIIQKLKKLDQQWYLGNSALERNLIPIQYNSQSSYHTLQGA
Ga0335049_0230279_459_683F101040N/AMNTEFFRARLEEVRSNLELTRVDKRRTLENLLERSLTQELKEVLRNNLSLLLQAEEKYLELERQYEILIQCGRH
Ga0335049_0230279_680_1105F057882AGGLTSITKNPKSSENNLKEFDHPEYGILNPSQVRELRGELTRHVIDSIGSLSNYLREKKTLDIKDRTTRFHFIRVCTIIKDLNEIDPEWYLRYLAPDDECIKIKLHDCKCCYHNCQKPDKIIQFPESSSNKSSQTEGKESTQE
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