NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335049_0212572

Scaffold Ga0335049_0212572


Overview

Basic Information
Taxon OID3300034272 Open in IMG/M
Scaffold IDGa0335049_0212572 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Jul2017-rr0156
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1352
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030661Metagenome184N
F063334Metagenome129N

Sequences

Protein IDFamilyRBSSequence
Ga0335049_0212572_294_788F030661GGAMYLGHLIINFCYRAVDFVHNTTVRFLINPLSGWCRRRCGDAGAAILEEVAADLGVRGGPGERWPVRRAAPQRYGPPPGAAPVARGPALPAERVAKPSTSALVNRMVNRPNVDSQAAQLAVAELQLAIRNAQVSFFFVLFYTCILSIRDPRTLCCTREVIAMYTV
Ga0335049_0212572_924_1166F063334AGGVSQDCVEARQELEERLARIQLAYEEALANLAECQSGGGVSGTTTTASLGSVTALLALAYLGGVYWRRYFGPDGPDYPLDR
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