NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335049_0154815

Scaffold Ga0335049_0154815


Overview

Basic Information
Taxon OID3300034272 Open in IMG/M
Scaffold IDGa0335049_0154815 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Jul2017-rr0156
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1636
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005946Metagenome / Metatranscriptome385Y
F091350Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0335049_0154815_1452_1634F005946N/APPVENAILVVSVEIFQSITAPGNQIMSDNFQPAPFILGRSLTNRVIGLLGPFLDVETMAQ
Ga0335049_0154815_3_257F091350GGAGMATDAITYDKSDLRGIIKAFKAMDEAAVAQAKGVSNGLATYLQSKIKSEAGNRPNNAASRIADGSRVSKSSKIGEISFGFVSQKF

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