Basic Information | |
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Taxon OID | 3300034272 Open in IMG/M |
Scaffold ID | Ga0335049_0027516 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Jul2017-rr0156 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4260 |
Total Scaffold Genes | 10 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (30.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F028489 | Metagenome / Metatranscriptome | 191 | Y |
F042298 | Metagenome / Metatranscriptome | 158 | Y |
F078619 | Metagenome / Metatranscriptome | 116 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0335049_0027516_1_231 | F078619 | N/A | MIMSDMTMCHGFDCPVKEKCKRFSSIPNEHWQAYFLNPPYTITDKVFECNMFWGDTQDAIMKQLMGIVTGKDGEELP |
Ga0335049_0027516_1252_1473 | F042298 | AGG | MGRMKEAFIQIMNDNNGIPEDMTLADFLKMKELNIYNWQEYERAQERTRLQSNKQTDLGETAKDSEGKSLRRK |
Ga0335049_0027516_3538_4206 | F028489 | N/A | MNRGIDSKHVQKMISSIRLMGVIRPVVTTTTNVIEGETKTYIIDGQHLATALEREGLSIPHVDIAVESEEDLVEKMAYLNNSSKSWDLMNYINAWKMIRPDYMKLFKWKNMYDIEITMLAAIGINNAGIRNTTSSIKTGNFQITNPKAEDMCKAFNDIFLKIGMSDRSVKFQFLAAFLQAYGTYNHTKVMSNIEKHMKTVKLLTDGDSTGAYIRTKIFNLPK |
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