Scaffold Ga0335049_0027516

Overview

Basic Information

• Taxon OID: 3300034272
• Scaffold ID: Ga0335049_0027516
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Jul2017-rr0156
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4260
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (30.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028489	Metagenome / Metatranscriptome	191	Y
F042298	Metagenome / Metatranscriptome	158	Y
F078619	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335049_0027516_1_231	F078619	N/A	MIMSDMTMCHGFDCPVKEKCKRFSSIPNEHWQAYFLNPPYTITDKVFECNMFWGDTQDAIMKQLMGIVTGKDGEELP
Ga0335049_0027516_1252_1473	F042298	AGG	MGRMKEAFIQIMNDNNGIPEDMTLADFLKMKELNIYNWQEYERAQERTRLQSNKQTDLGETAKDSEGKSLRRK
Ga0335049_0027516_3538_4206	F028489	N/A	MNRGIDSKHVQKMISSIRLMGVIRPVVTTTTNVIEGETKTYIIDGQHLATALEREGLSIPHVDIAVESEEDLVEKMAYLNNSSKSWDLMNYINAWKMIRPDYMKLFKWKNMYDIEITMLAAIGINNAGIRNTTSSIKTGNFQITNPKAEDMCKAFNDIFLKIGMSDRSVKFQFLAAFLQAYGTYNHTKVMSNIEKHMKTVKLLTDGDSTGAYIRTKIFNLPK