Scaffold Ga0335049_0023539

Overview

Basic Information

• Taxon OID: 3300034272
• Scaffold ID: Ga0335049_0023539
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Jul2017-rr0156
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4624
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium Tous-C10FEB (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001725	Metagenome / Metatranscriptome	645	Y
F088512	Metagenome	109	Y
F090066	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335049_0023539_2270_2680	F090066	N/A	VFVSVSRFGKIMALYPDFLDDAKEMLADFGVAGSSNSGAITFLCLISDPMQTQVLEAGGYCDRTQFSVKVATATASWTASDGRVGASTGLLVSGAPHSSLGFGKKITAGGKTVRVNSVTYKPGSAWITLVVIDDNQ
Ga0335049_0023539_462_842	F001725	N/A	MASILKGTTCLFGVSGAVTNLFVQSYSLSSNFNEEATVADENGLTKTWRADDRKSELTVEGIVKVGTMPALGDAITFSLNANTAYPSGSASSSFAGWITKIDEKGGNKEFVKVSITAVDFEGVSNA
Ga0335049_0023539_868_1299	F088512	N/A	MGTKSIRHIVESVVKTYLQAETGLAGVNVYSGDSSDVMQLPKAVVLCDSAKTPADLPEGLGNYSCSVRVTLFSSVDDTTLSDHRARCAALTARMQDLAELKTAFSASADAFCYDVSLMSEDEGVDERNWATVFAFDILAVLPA