NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335049_0016024

Scaffold Ga0335049_0016024


Overview

Basic Information
Taxon OID3300034272 Open in IMG/M
Scaffold IDGa0335049_0016024 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Jul2017-rr0156
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5607
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (33.33%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F047677Metagenome / Metatranscriptome149N
F066778Metagenome / Metatranscriptome126Y
F070109Metagenome / Metatranscriptome123Y
F072341Metagenome / Metatranscriptome121N
F077297Metagenome / Metatranscriptome117Y
F084221Metagenome / Metatranscriptome112N

Sequences

Protein IDFamilyRBSSequence
Ga0335049_0016024_1_174F084221N/ASNHQQQIAEGVTGTISSILLSVPAWMLDVEFALKIFCLLLSAAASIFTIYKMNKKRR
Ga0335049_0016024_2212_2820F066778N/AMSYNREPNWQKLKPEIDWDEQENKLADKLDKYINQNKQTVMNQSVVKSQKFVRDWNGPSGTIYYFDLVLENGEVGQVGVKDMQSPKIAVGATIHYTSEERTGPTGRKSTNFKLQNPNPFNGAGKGIVQSAYTPRKESPEVQNSISRSVALNNAVLFCKEQKGAKASDVIDTAEIFLTWLKEEYIVETKLAITNEAADDEMPF
Ga0335049_0016024_335_580F047677AGGMKWLKSVFSNEGDASSKRVASILALLVCINLSYIGTFTDYKTPEYMFDGMLILAGSGLGLTVIESIFDKKKSNDTPSEGTN
Ga0335049_0016024_4761_5504F072341N/AMSKELAASVLQSFNRSLSAEERAIAECISSPKLHSLSEQEFRELIAQAAVINSIKALPSDIEVTLLQQLTQSTYRSTSIKDWQNAFLYNAIGKDFERVEAFNLFSISFMADVLKRYEEYKSKVWRELNKALILPEAQSKPIEPTNPIDDLHADAERYKNGKQTWVEISAPYNCQRLFRQGIYKKSDWMPEMWERMDDLAEQRIAQRWKDSNKLRNEGTEQDFINAKKIELSRIVYIDIIKQINKEKS
Ga0335049_0016024_552_908F077297N/AMTHQAKEQIKGAAIIVIAISICIFMQLMYIRIKEDEKALEGYERRAEKATKIIDSLEATNVQRMLQIDELNKQLERNTAIYEANINAIDSLDRNGLRRAMHSLLAELAGERYPGQSND
Ga0335049_0016024_877_1191F070109GAGVRDTLVSLTISEVRALLKLKAERDYLKTQFITLSKSDSISAIVIKDQQKSIDAWALTNEKTSQQLIKAQQELSTEAARKESWRSAALIGIPISFVGGIIFTLFF

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