Scaffold Ga0335049

Basic Information
Taxon OID	3300034272 Open in IMG/M
Scaffold ID	Ga0335049_0011216 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Jul2017-rr0156
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034272 Open in IMG/M

Scaffold ID

Ga0335049_0011216 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Jul2017-rr0156

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6683
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (25.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

6683

Total Scaffold Genes

12 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (25.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000557	Metagenome / Metatranscriptome	1026	N
F007111	Metagenome / Metatranscriptome	357	N
F008996	Metagenome	324	N
F075703	Metagenome / Metatranscriptome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335049_0011216_1737_2306	F000557	N/A	MKLQDLTIDQFQRIGAIEFSSVLGDYDKRAGVVAIVEGVDISIVREMPAKSVLKRYKAIISEWNALPALGYKRKFKAGGKWWVPTVFTDELTAGQLIELMDANTTDEKQLLQNLHRIMATLCREGGLFGFFPKKYDGAAHAERAELMKKHAKVGDVWGVVSFFLLSSESYLKVLSDYSKHLMTKAGELT
Ga0335049_0011216_2_880	F075703	N/A	MAVTVLSGSPQVATPVYNKMLFKVSSNEIAQPNYRFVCDVKDNAGTTYARLKCDKLPITNQGFFDVAKVVETLIAPTKPTLSQTAFSNHSGYYSGYRLDFFDEYGNTPVVQTGTVTTVSGRLGFAGNLEQLEFQSYNSATRFPSGTLLGSLALTTPTRFVWHSNTEARWLVQGKGTTTANFDKALIRYYTADGTLVREYTVNNGQPAVQQVVRFGAGPSNVRALTSGQASDGFSGEYLFPSDEGEYYTIAFGDSAWNDFNQRCDADGADPAESSFCLEERFNELYEDNYDNFG
Ga0335049_0011216_2851_3585	F008996	N/A	MKLLANIAYHHNPERIPNLIRVIEAIKSYPVQADIFVDTNDPEVVGLLADQPVTVHAHTQLSHPWALTAVHRTRIKETYKYFDWVAYFEDDMMLPKEGFVNFTEQFDSMFADGLYPSFTRIETYDDKEGECTPDINQDLPGSVWCEWNGKDYVSLPYYINYHAFWMFSTKRLKEVLTRNPGELDHIPNNGLYRESLASFPIWSLNLKPMLEFTEQGELADHCKVFHLTNNYKHGSRDIKAIFKR
Ga0335049_0011216_882_1529	F007111	GGGGG	METTILANGKPVGKFGSGSMKGIDETALEGIGSVVGPKGGGKSPTYDVLVKWIERVIELAKKNLEAANANAGGTLSASIAPEDIELSAKQIVVAIMANPYWKYVDQGVRGKTSSLKAPRSPFQYRDKYPPAQAMADWIANKEKPVVPTYSRELKRMRTKQEQGLVDGRSVAYWVFQRGTRATNFMSNALSPEMIDVLVNTIAETLGKSISVATKL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335049_0011216

Overview

Ecosystem & Geography

Associated Families

Sequences