NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335049_0009550

Scaffold Ga0335049_0009550


Overview

Basic Information
Taxon OID3300034272 Open in IMG/M
Scaffold IDGa0335049_0009550 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Jul2017-rr0156
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7218
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (17.65%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000716Metagenome / Metatranscriptome923Y
F049561Metagenome / Metatranscriptome146N
F098924Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0335049_0009550_2240_2668F049561AGGAGGMTKIKLELEETDMFNAIKKIIDHPNRVEIAKALTSILAPNERLSSIFFKTYFGSSAPQILPEGTMITVSPRDLSYKANIDGMKKLGLLNISGHATAIIKEFKGFSDYTTYIVNFMNVDENDKTFEDTGFIAYNQIESIIEEL
Ga0335049_0009550_2869_3189F098924N/AMNVLGKLFNKKKTYPKNNEFEVLIIGEDKSDFQEMLGITDKRKEELVKLAFISYKNEDLFTSSCKAVVAKCTHINEVVFVMTILTKIREVESNPLSLLLGSIGRGE
Ga0335049_0009550_691_1188F000716N/AMIKPMYIMEKLKEQVRNYQLRSQTVMSYEQDGYSAYQNYLYKRALYGLDALTEKELATMCSKKKQRIINVYKRAQVTLNKFKQHITIKYSNAIFETLFPNSPITQFLLADTETDEKFKNTLTFKDLGIEKQDIIAIFIAEGILPKNFFDLKDAPLALPRLKNEVK

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