Basic Information | |
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Taxon OID | 3300034272 Open in IMG/M |
Scaffold ID | Ga0335049_0009550 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Jul2017-rr0156 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 7218 |
Total Scaffold Genes | 17 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (17.65%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000716 | Metagenome / Metatranscriptome | 923 | Y |
F049561 | Metagenome / Metatranscriptome | 146 | N |
F098924 | Metagenome / Metatranscriptome | 103 | N |
Protein ID | Family | RBS | Sequence |
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Ga0335049_0009550_2240_2668 | F049561 | AGGAGG | MTKIKLELEETDMFNAIKKIIDHPNRVEIAKALTSILAPNERLSSIFFKTYFGSSAPQILPEGTMITVSPRDLSYKANIDGMKKLGLLNISGHATAIIKEFKGFSDYTTYIVNFMNVDENDKTFEDTGFIAYNQIESIIEEL |
Ga0335049_0009550_2869_3189 | F098924 | N/A | MNVLGKLFNKKKTYPKNNEFEVLIIGEDKSDFQEMLGITDKRKEELVKLAFISYKNEDLFTSSCKAVVAKCTHINEVVFVMTILTKIREVESNPLSLLLGSIGRGE |
Ga0335049_0009550_691_1188 | F000716 | N/A | MIKPMYIMEKLKEQVRNYQLRSQTVMSYEQDGYSAYQNYLYKRALYGLDALTEKELATMCSKKKQRIINVYKRAQVTLNKFKQHITIKYSNAIFETLFPNSPITQFLLADTETDEKFKNTLTFKDLGIEKQDIIAIFIAEGILPKNFFDLKDAPLALPRLKNEVK |
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