Scaffold Ga0335049_0009550

Overview

Basic Information

• Taxon OID: 3300034272
• Scaffold ID: Ga0335049_0009550
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Jul2017-rr0156
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7218
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (17.65%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000716	Metagenome / Metatranscriptome	923	Y
F049561	Metagenome / Metatranscriptome	146	N
F098924	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335049_0009550_2240_2668	F049561	AGGAGG	MTKIKLELEETDMFNAIKKIIDHPNRVEIAKALTSILAPNERLSSIFFKTYFGSSAPQILPEGTMITVSPRDLSYKANIDGMKKLGLLNISGHATAIIKEFKGFSDYTTYIVNFMNVDENDKTFEDTGFIAYNQIESIIEEL
Ga0335049_0009550_2869_3189	F098924	N/A	MNVLGKLFNKKKTYPKNNEFEVLIIGEDKSDFQEMLGITDKRKEELVKLAFISYKNEDLFTSSCKAVVAKCTHINEVVFVMTILTKIREVESNPLSLLLGSIGRGE
Ga0335049_0009550_691_1188	F000716	N/A	MIKPMYIMEKLKEQVRNYQLRSQTVMSYEQDGYSAYQNYLYKRALYGLDALTEKELATMCSKKKQRIINVYKRAQVTLNKFKQHITIKYSNAIFETLFPNSPITQFLLADTETDEKFKNTLTFKDLGIEKQDIIAIFIAEGILPKNFFDLKDAPLALPRLKNEVK