Scaffold Ga0335049_0004001

Overview

Basic Information

• Taxon OID: 3300034272
• Scaffold ID: Ga0335049_0004001
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Jul2017-rr0156
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10892
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043396	Metagenome	156	N
F048312	Metagenome	148	N
F056614	Metagenome	137	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335049_0004001_1559_1942	F048312	N/A	MPTSIQANVRAPLATALAGVTASVYESVPEAVIPPAAIIVPGTPYLETTLINSSIQLKVNFTISAAVAYNNNAGALDNLEKLVIQILAAIPSGYIVGDVSRPSIVTLGSSNLLISDIDVSTYYKQEN
Ga0335049_0004001_4973_6220	F056614	AGG	MTVFNPIWRVKIQGVEYTTYVLANLTIASGRDNIYQQAQAGYCNLQLINLNQAIVNININDSVSIELKDSTNTFVPIFGGTVVDFGIEVSTAGNVAINQTLNITALGALSRLPKALTDGILAKDFDGDQIWEILQDLLLNNWGEVPAAEQWQNYNPTETWATAANVGLGEIDRPGNYELAARSSNRTDVYSLVSALATSGLGYIYEDASGLISYADSTHRSIELATNGYTDLTANQALFNGLKIQTRAGDVRNDITIKYKANGSSEVSAEDIGSVEQYGRLAQIITTTLDKATDAQDQADFYLTLRATPQANFTSITYQLTNPELDDADRDSLIKVFMGLPLRISDLPPNMAAGTFLGFVEGWTFKAAYNEIAVTLNLSPISYSLQALKWEQVPIAESWNTITGSLTWETALVVA
Ga0335049_0004001_9081_9581	F043396	GGA	MGINKITLTRDEEVQAAAAAFTCEFKGEENFYFHDQAMRGNIHDSIKRTAEAFGAEIAAAKFFGIKDFKIELDKFKIRADIGNRIEIKHTRWLDGHLILQPRDRADDLAVLVVGESPTYYVKGWIPIRAAKTSRFKHDKTESWWVSQDNLNSMENLKESNYGQIEI