Scaffold Ga0335049

Basic Information
Taxon OID	3300034272 Open in IMG/M
Scaffold ID	Ga0335049_0002247 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Jul2017-rr0156
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034272 Open in IMG/M

Scaffold ID

Ga0335049_0002247 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Jul2017-rr0156

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	14039
Total Scaffold Genes	41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	34 (82.93%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

14039

Total Scaffold Genes

41 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

34 (82.93%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (71.43%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022399	Metagenome	214	Y
F022870	Metagenome	212	Y
F023329	Metagenome / Metatranscriptome	210	N
F024101	Metagenome	207	Y
F042303	Metagenome	158	Y
F063633	Metagenome	129	Y
F084152	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335049_0002247_10323_10586	F022399	GGTGG	MDKKYQSIYIKNGLEVFVNPEDFWADYKVRLNGYHAKSFYGETAWMDVTRFVHDQAMEFWDFDVDGIHRQWKTDLLEELERRFSDAE
Ga0335049_0002247_11208_11459	F023329	GAG	MVDEEKEIAQLEAFFKYNISNDEILSGRLKILMADLSWKMELPTWTKEELDVMSARMDALVELSNLLYDIQWHRLNWERKQNA
Ga0335049_0002247_12352_12570	F084152	AGGAG	MEEYKVVDRILPNYLEQGDLIKVKGEVFQILNINDTAEGWDLIVLDNYEETKIIQVPEDKLVSVVMQDNLEL
Ga0335049_0002247_2725_2946	F022870	N/A	MTLLLVGVWNKYDKKGCVDKYTADILATQFLYGEGIDVDRAMTAIYNNGGWVEDELTPDVEVIFPCLKNEDFI
Ga0335049_0002247_3077_3271	F042303	GGGGG	MINIYSKTYYRIENTKYFLSNAIDTIKYHVSNVVDSVRYAHDETWLAIALVTTWVFCAYVASVN
Ga0335049_0002247_5321_5590	F024101	GGAGG	MPKEKPIHKMVEEVFDKDVNTDLLDELVEERNFIVNTMKKFVEHDEIWVQLVDNIEARKQFLINLQMLFLNEIENQTLIELATTKWGND
Ga0335049_0002247_6686_6841	F063633	N/A	MSHTYKDKKIQHVQGLRRSNASGTHKNKVKDRQKRISSAKIWKDYLKDENE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335049_0002247

Overview

Ecosystem & Geography

Associated Families

Sequences