Scaffold Ga0372943_0297233

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0372943_0297233

Scaffold Ga0372943_0297233

Overview

Basic Information
Taxon OID	3300034268 Open in IMG/M
Scaffold ID	Ga0372943_0297233 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Eldorado National Forest, California, USA - SNFC_MG_FRD_1.2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1025
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Eldorado National Forest, California, Usa

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	38.7833	Long. (^o)	-120.2976	Alt. (m)		Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002548	Metagenome / Metatranscriptome	549	Y
F068035	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0372943_0297233_2_202	F068035	N/A	IAEKIGTGLARDGIARMIPVVGAVTAGVLNYAAVRATARNAIRYYETRVEPSDADEFWADGDREHA
Ga0372943_0297233_267_575	F002548	N/A	MPKFGIETTEELRSTFFERRRLRRIRMIIELTHNMVSGDRTVSHREARCLVNCARKAILDLHPGFEARYDRLVRPHFERVLAERWPHEQALDLDSCGDDIVN

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.