Scaffold Ga0370495_0000002

Overview

Basic Information

• Taxon OID: 3300034257
• Scaffold ID: Ga0370495_0000002
• Source Dataset Name: Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_02D_17
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1014150
• Total Scaffold Genes: 988
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 712 (72.06%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil → Peat Soil Microbial Communities From Wetland Fen In Alaska, United States

Source Dataset Sampling Location

• Location Name: USA: Alaska
• Coordinates
  • Lat. (^o): 64.9142
  • Long. (^o): -147.835
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037656	Metagenome	167	Y
F059036	Metagenome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0370495_0000002_385015_385353	F059036	GAGG	MAAAEKVSIDLAEDEERCLVHARTAARQAVMKGMDRETLADAFMLEAVKLTFGVEDPEAALLAQRWKEQTFRLLDADYVTHTAEGRPQVVRLLRPMTRERLLTSTAWVRELI
Ga0370495_0000002_819928_820458	F037656	GGA	MQDHFMKRIAFVALVATLLSGCFGSDKPMFAEATAVRALEPGRYGLFEQYGDQTKPSEYMEIRQRGNVYDFINEKGAVNPVTFHPIAGGLFVAQVGGMPRLNTDKKGYGYALFKIDGREALVYVVECDKQDKAMLATLGVEIRGQYECHIDNVANPPAFFAGLRRSDPPSRMVREP