Scaffold Ga0334937_026310

Overview

Basic Information

• Taxon OID: 3300034221
• Scaffold ID: Ga0334937_026310
• Source Dataset Name: Biocrust microbial communities from Mojave Desert, California, United States - 33SMC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1537
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Biocrust → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 34.7856
  • Long. (^o): -115.66

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003047	Metagenome	510	Y
F028302	Metagenome / Metatranscriptome	192	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334937_026310_156_590	F003047	N/A	MWTNTTSARVPVIYPESSENICRIGHTDTGREEEFMTGDALVEEINAAYVRLETAAEELARADHKLAEHVSRVRLDNAEAILEARNERTASLYLDGMLDTEEHHRLQTERTRAELDLQHARREVERLHLIVRLLGTQTGEGTQD
Ga0334937_026310_581_877	F028302	AGTAG	LSTSIERKEPTVADVHVYVNRTAAKEGTALEDLGEALRKLDYVSDVDINAPGNVVAVSFEGGKAEQEEIKDTVEEAGYEVSRLSVRSTISEERNLWDI