Scaffold Ga0334937_010454

Overview

Basic Information

• Taxon OID: 3300034221
• Scaffold ID: Ga0334937_010454
• Source Dataset Name: Biocrust microbial communities from Mojave Desert, California, United States - 33SMC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2297
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Biocrust → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 34.7856
  • Long. (^o): -115.66

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026601	Metagenome / Metatranscriptome	197	Y
F076051	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334937_010454_1551_1934	F026601	AGG	VGLFDKIKGAQAQAQEAMKNSGGMGSMMGGMDMGAAAGEQQKMQKIAQQGIEAPGVIHAIRPSGKNEFGGGQKVDFDVSIRPNGGEPYQTTITQSMLPAQLEGLSEGHAITVKYDPDAPAVALIYGW
Ga0334937_010454_1944_2297	F076051	AGGAG	MGLWKTAKDVKNLTSHHGGMPSIRGAFKDVASMADDRGEGDVIKHGVPAKGIVKGFPEPVPNDRFAMHVPIEVHGPSGAPYIVDYVFPTTRMKAAITAGMEVPVKVLPDEPQRIAVQW