Scaffold Ga0335065_0146384

Overview

Basic Information

• Taxon OID: 3300034200
• Scaffold ID: Ga0335065_0146384
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Jul2013-rr0190
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1575
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F053899	Metagenome	140	Y
F055551	Metagenome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335065_0146384_319_489	F055551	AGAAG	MSILKANTNKPWMAPEYDIPVLDNEEMWSQKVIDETAQYLWLEINREESANVDSND
Ga0335065_0146384_461_679	F053899	AGGAG	MPYKAEFEAVMNRIRNLDEYEVEVTIPEDFQFEGPVPFDISIAGDKAWVKILAVSMEEAKFKAYEYFEGKHK