Scaffold Ga0335065_0038720

Overview

Basic Information

• Taxon OID: 3300034200
• Scaffold ID: Ga0335065_0038720
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Jul2013-rr0190
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3342
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (8.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F082606	Metagenome	113	N
F097251	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335065_0038720_1564_1863	F082606	N/A	MSLVVLTAQCSGMVAPVIPTGQKVYKMSPNPRGVRVERDLWRFHPGMPCYVRGWPQVEATVISKVEGCSWPTYLVQSFATGATYQVSQLYLSKRPIEQR
Ga0335065_0038720_730_1077	F097251	N/A	MDSMIILTDSQIVELNNRIGQIQRLIESAQVIKSGGAAQPKAITEVTEKPSIVGKTRKAKRKRGALNEQKVAEIKGRLAAGGESAQKIANDYGVHVTTVNLIKYGKTWKNVQASA