Scaffold Ga0335065_0007850

Overview

Basic Information

• Taxon OID: 3300034200
• Scaffold ID: Ga0335065_0007850
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Jul2013-rr0190
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7577
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (55.17%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003331	Metagenome / Metatranscriptome	493	Y
F017818	Metagenome / Metatranscriptome	238	Y
F056403	Metagenome / Metatranscriptome	137	Y
F077968	Metagenome / Metatranscriptome	117	Y
F101046	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335065_0007850_3216_3401	F077968	AGGA	MTDTWKKWTIWTSIHLFEYCVYSWSNLMYPHIHGFEDEERMRELFWYYLNYGNCNTYYQY
Ga0335065_0007850_3398_3580	F056403	GAGG	MTEIPIGSKWKHKNSNDVYVVMEQYSHRVVLQHELTGTSIKLTVGHLNSDGFADYERIKE
Ga0335065_0007850_4003_4251	F017818	GGA	MNKDAYYDWIDENDTYPKHSHKWIVGLYNKYEGVETLHRYFGPFDTKEEAKIFAANYREKYTKPGFISSVRVFPLCEVVEDT
Ga0335065_0007850_4759_4950	F003331	N/A	MKLSEKAKIYYNIWCCAYRRRYAAKLKGDWELYDREHQTLLMCLNMKDAKWWSFDSEKPKHLE
Ga0335065_0007850_710_1009	F101046	N/A	MDFTDYGISLEPEELREIITGKMGFRKCPDCQGDGESWTLHYVLADDLDQSNEQFKDVSAQFAADFDEDNLPPQYSFGECYLYKCDTCKGVGYVPISGY