Scaffold Ga0335065_0000369

Overview

Basic Information

• Taxon OID: 3300034200
• Scaffold ID: Ga0335065_0000369
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Jul2013-rr0190
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 32229
• Total Scaffold Genes: 62
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 38 (61.29%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011077	Metagenome / Metatranscriptome	295	Y
F017301	Metagenome / Metatranscriptome	241	Y
F034573	Metagenome	174	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335065_0000369_22785_23057	F017301	AGGAG	MSNIDTKQLKAMGASYGRSVLGAGIALYMSGITDPKDLWAALVAAIAPVLLRAINPGDQAFGLLPTVESVDKALKAAKAPVKKAAAKKKK
Ga0335065_0000369_27888_28046	F011077	AGGA	MHELMDTNLTWDDGDIWKGWTYSPEKNRYYFDDIGNESLCALWDSEFLMQAY
Ga0335065_0000369_31179_31412	F034573	AGGAG	MYRISRANRTTNEEKVAIAIGKHLSDFYLDLEKVGYYLAKATPYLIYRRALEVLESAKFQEDEIEHAKLQYDQRRLP