Scaffold Ga0335065_0000241

Overview

Basic Information

• Taxon OID: 3300034200
• Scaffold ID: Ga0335065_0000241
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Jul2013-rr0190
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 38601
• Total Scaffold Genes: 61
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 40 (65.57%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002997	Metagenome / Metatranscriptome	514	Y
F006660	Metagenome	367	Y
F023109	Metagenome / Metatranscriptome	211	Y
F026565	Metagenome / Metatranscriptome	197	Y
F043944	Metagenome	155	Y
F054875	Metagenome	139	Y
F082346	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335065_0000241_10182_10511	F043944	N/A	MVFNGHTPDSIAEIDDVTMANIQTMYADGMIGNYGLLTQMATLTNGVFNYMRPPNTPLYKLANILGNAYDYIYPPLTEEQQKAAVNDSLIGFMSQAQGFNKTKFGVKDG
Ga0335065_0000241_12501_13151	F006660	GGAG	MSFQTIFEIQQSMTVQNRRTVGQQYSRSGQVRVAQYLTSVPWVFVVEPHSYLYYPQVRNVIQAIDNKDRQLPETISFASNNLSWFVRYQGDLSTLQQNALTLASLPAANSQTITVGNLPSISSSAYIFKAGDFLQLGIYPYKVTADVPRGSGSTVTVSLHRPVIGTPTVGPLSGIGVGCSFFMLAERCPTYTLNPAPNGAFVQWDEPFVFREDITG
Ga0335065_0000241_13805_14251	F023109	GAG	MIRLATRYDIPRLLEIVEAYAKENTITKLGDSNNHFPKYVEELLFGILQGKGFIYIDNHMRGAIIAIKQNNIWSPKVRELHELLWWVEPEHRNGTVGGRLWKEFDTHAKKMLEVGSIDLIYTSISANGPLIDYTRRGYKPVGATFVRE
Ga0335065_0000241_19230_19718	F026565	GGA	MAIFNKNTLLQVSGFDNEIIAGELVWQQRTYWNMTMTAADGVTPIDLGGASIDAQIVRRSVTNIQDTRNGLSFDIGNYTPTPTPIALSITNRSDATGFFTLVINDNTWDLINSDPELNINAVDCVGFSGRIKIGFPANATNPQDDSIIFLLFLVRSDGIVVT
Ga0335065_0000241_30956_31162	F082346	AGG	MIRFSKENLLNELQNQIAKMEQIWGFVSDNGTNQIKDQTDFDRVVAYGQYSALNDIYESVRDNTFLNI
Ga0335065_0000241_7552_7896	F002997	N/A	MAIKRFENIDINNLTFGASNFGEQSTTQTKWFATRALVGDVSNSVRISEKYRLYQDLVNFTLNYTPNMKAIVDSQQLYSIRWRNADWRITDARESNDRMRVTFLCYRSDPVVAV
Ga0335065_0000241_9667_10149	F054875	AGG	MTKFSSAFGDKYQSNKKNLLTRTFELGGHIFKVRIPLVAESEAIYQKVASPDEEIVEKIYQEITASLRQFEGNQTDEFQFTENDVLVEGRSMREAAKNKAITEARITEFFKLLVPELEGATLDDLTYKDIQEEFPISVQMQIVEKIGEVISPTYKEARGN