Scaffold Ga0335065_0000173

Overview

Basic Information

• Taxon OID: 3300034200
• Scaffold ID: Ga0335065_0000173
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Jul2013-rr0190
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 43680
• Total Scaffold Genes: 88
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (28.41%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050364	Metagenome / Metatranscriptome	145	Y
F060915	Metagenome / Metatranscriptome	132	Y
F071252	Metagenome / Metatranscriptome	122	Y
F086587	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335065_0000173_13832_14116	F060915	N/A	MKTKLNWKKKWLDDKSGYWHSAKVPIINWEYIVDEYYCMGDSKRFVGCLFFSKFDDDATRVSNKFYKTEESAMNACEKHLQDTAEKFTKWINKK
Ga0335065_0000173_22515_22748	F050364	N/A	MIPKKYATYQNTKVGDKIRFRESTIHWFTNRIENAKKLVSGQIYTVKKISVASSSTGVILEETNEEVELTWFDIIEN
Ga0335065_0000173_23909_24184	F086587	N/A	MKENEEMFEELRYALRHKPTKKWVEFENDELELTVTVITLVDFKHCTISRTKGYLETFLRRSVFNGMPNYGNENFLEFEVVKLKVTYTIES
Ga0335065_0000173_28255_28518	F086587	N/A	METFEEYKYAIRHKPTQKWVNFKNDDLEITATTIELVDFKDSLISANRVILETFLKMSSFNNTPNYGNENFLEFELVKIKTTYTIEK
Ga0335065_0000173_29669_29920	F071252	N/A	MKNYDKFLKKALDKMFQMVGFEKFDGDFADQENWYSLKTWTEEQSADFKKWFITEGKKDLKFTKQMMEKEHAWFNLKWGWKEV