NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0364934_0259998

Scaffold Ga0364934_0259998


Overview

Basic Information
Taxon OID3300034178 Open in IMG/M
Scaffold IDGa0364934_0259998 Open in IMG/M
Source Dataset NameSediment microbial communities from East River floodplain, Colorado, United States - 27_j17
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)658
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment → Sediment Microbial Communities From Colorado River Basin Floodplains, Colorado, United States

Source Dataset Sampling Location
Location NameUSA: Colorado
CoordinatesLat. (o)38.9229Long. (o)-106.9499Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016216Metagenome / Metatranscriptome249Y
F040877Metagenome / Metatranscriptome161Y

Sequences

Protein IDFamilyRBSSequence
Ga0364934_0259998_2_442F040877AGGGGGMKATVTALALAAALISVGCGEGRVIFNVDVLSFLGPADSVRPYDVPGGVPTVDSTFSRQFSLPPGFGNSSVDEVAATAAAVLENTAGGGDVTFEVFFAKTQGALFSGTPYVTAASGPVSGVQTVQLLPPTTVALSDTVFNASDLWVG
Ga0364934_0259998_453_632F016216N/AMGPFAVRGGVSRDQRKKMQFGWGGGLRLGPIGLDVGFWTHSNSFATQRGIMMATSISVY
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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