Scaffold Ga0364934_0000125

Overview

Basic Information

• Taxon OID: 3300034178
• Scaffold ID: Ga0364934_0000125
• Source Dataset Name: Sediment microbial communities from East River floodplain, Colorado, United States - 27_j17
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17624
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment → Sediment Microbial Communities From Colorado River Basin Floodplains, Colorado, United States

Source Dataset Sampling Location

• Location Name: USA: Colorado
• Coordinates
  • Lat. (^o): 38.9229
  • Long. (^o): -106.9499

Associated Families

Family	Category	Number of Sequences	3D Structure?
F059823	Metagenome	133	N
F063176	Metagenome	130	Y
F080633	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0364934_0000125_16925_17224	F063176	GGCGG	VTGGKVGTRADRIEGLRRRGEFERDVLSREVAGLRAEVDRTGARWKMAGWIAGGLAAAWTVGHKLFGRHSLAAKLGRISSAASVIFGIGKAVGRARKLW
Ga0364934_0000125_5193_5648	F080633	GGA	LNLPLKNRADLVARLELVEPERVLLIDSPPELASLVEVARPAPRTTRLASGDALRMVKESFDAILVWREDRGGSRSIFERAVKRLDGAGAIWVVTALRKVRGPTTPAVHRLELSDLVKAFAKDGLEHDREVRVSAWNVAYRFRDTGKKSRS
Ga0364934_0000125_5658_6050	F059823	N/A	MADRKTTPPVVGDRPSRPSDVDRPSRPSDVDRPSRGSGSDSGKQPRRPKAEQYELKVRWETARQVLEVTPTGVRFDFASPLKVGTRYPVSLKAPGVAFSTTLEVSRCQLTVDPTSGRFFRVTAKFFPYVE