NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0364931_0047698

Scaffold Ga0364931_0047698


Overview

Basic Information
Taxon OID3300034176 Open in IMG/M
Scaffold IDGa0364931_0047698 Open in IMG/M
Source Dataset NameSediment microbial communities from East River floodplain, Colorado, United States - 21_j17
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1294
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira → Nitrospira sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment → Sediment Microbial Communities From Colorado River Basin Floodplains, Colorado, United States

Source Dataset Sampling Location
Location NameUSA: Colorado
CoordinatesLat. (o)38.9229Long. (o)-106.9499Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F054395Metagenome140Y

Sequences

Protein IDFamilyRBSSequence
Ga0364931_0047698_932_1258F054395GGAMMVKLLDQPVDLLIGPIVEKIGVGQLWKGGLHCGGVFDGTLFDTMAVIRRKAGESLLEGVDVEEGDGKRADATAGAAESAGNFTQQGGSCPLEPVVSFLIQRSRVGRS

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