Scaffold Ga0334925_000129

Overview

Basic Information

• Taxon OID: 3300034173
• Scaffold ID: Ga0334925_000129
• Source Dataset Name: Biocrust microbial communities from Mojave Desert, California, United States - 21HNC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 46722
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (35.71%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Hypolithic Biocrust → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 34.7856
  • Long. (^o): -115.66

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002548	Metagenome / Metatranscriptome	549	Y
F092677	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334925_000129_19158_19757	F092677	N/A	MRVFAVVSALCALLIAGCANDSAQPDHQAEWRNVLQHKKAADASAAHRQIYADTLRAFVQKHPNHSRAREVWQRMQNEFADDLASMGRYQDAIRFYRAVLAHDPSNERARNGLALAADRLAVTREKLLRLEKGMSQRQVAALLGRPMPGWSVRNRRAEATMDAWYYRTRDGAVAGVYFRDGKVFAAEERSNAPVGRLGS
Ga0334925_000129_20818_21120	F002548	GAG	MPKFEHETHTEDSSAYFERRRIRRVRMIVELTLNLIGSDRTESHREARCLVDCARKAILELFPGFEQRYERIVRPHFERVLQQRWPEDELRYISPSEMVN