Scaffold Ga0334925_000013

Overview

Basic Information

• Taxon OID: 3300034173
• Scaffold ID: Ga0334925_000013
• Source Dataset Name: Biocrust microbial communities from Mojave Desert, California, United States - 21HNC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 171881
• Total Scaffold Genes: 155
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 73 (47.10%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Hypolithic Biocrust → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 34.7856
  • Long. (^o): -115.66

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038723	Metagenome	165	Y
F041799	Metagenome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334925_000013_2192_2758	F041799	GGAG	MVDESVTVKGSPVRSLQKFIDAELTPPQREAVFAALPPEYAKRFRTPVLATETVPVHMLNRFTEESAKAKGETLEAFARRAGREAAGDAVKGIYRFFALVMTPPALLGKASQMWSSLYNRGELRVDSQTEKSAHIRLANFPSEVAGCSRVTGWLERMAELTGVKNVKVVQTQCAAKGGAACEWDLTWS
Ga0334925_000013_9666_10046	F038723	N/A	MTDRFDLLSRSTSGLTYVRDRKAGVMRVLTESELADFDDPPPCPECSEQFGCEHYNCAGEPLLAETDLEANVPPEWLPFAKEHGISRNDLERLRTVEQHEGEYRLAAGTNADMRAQELVLLLNESR