Scaffold Ga0334913_062941

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0334913_062941

Scaffold Ga0334913_062941

Overview

Basic Information
Taxon OID	3300034172 Open in IMG/M
Scaffold ID	Ga0334913_062941 Open in IMG/M
Source Dataset Name	Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 9HMS
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	783
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	34.7856	Long. (^o)	-115.66	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F062904	Metagenome / Metatranscriptome	130	Y
F081531	Metagenome / Metatranscriptome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334913_062941_318_512	F062904	N/A	VWYKAIGGVIMNPEQERQAQAQRVEDRIQELDKDLRFLSLQISKIEKMIRTALEQVKIVNLSAP
Ga0334913_062941_49_300	F081531	AGGAG	MERISLHLEEFVEKLNEELSSHPECLPGMTITILRPQLKYSYEICDPTRDPTKPGSLQERMRADRVFKEVLAKVNEKYELIRP

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