Scaffold Ga0334913_014667

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0334913_014667

Scaffold Ga0334913_014667

Overview

Basic Information
Taxon OID	3300034172 Open in IMG/M
Scaffold ID	Ga0334913_014667 Open in IMG/M
Source Dataset Name	Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 9HMS
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1805
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	34.7856	Long. (^o)	-115.66	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F021173	Metagenome / Metatranscriptome	220	N
F061624	Metagenome / Metatranscriptome	131	Y
F064462	Metagenome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334913_014667_2_265	F061624	N/A	LEPALRELCEGLGWSVVRLVEDALPAIDPVRRRVPGADDEGAFLAWAYTLAVDEALDRLAARGLVTPPPTGVTAVRVTDPALAGAAL
Ga0334913_014667_343_501	F064462	N/A	VEEAMPADLVAIAILVLAALTAPLAADFRRRLATRRFDAIYERNLLRRTGRG
Ga0334913_014667_575_862	F021173	AGGGGG	MATPVIISLLVGLVAGGAFMAMWAANRIEEEGVRQFDRGFERGRWLTDISVAKAVEDQDRARRVGLLVAGTRQPSGPPTTRPPGQEPRPSLLVIP

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