Scaffold Ga0334913_003450

Overview

Basic Information

• Taxon OID: 3300034172
• Scaffold ID: Ga0334913_003450
• Source Dataset Name: Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 9HMS
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4805
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 34.7856
  • Long. (^o): -115.66

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005860	Metagenome / Metatranscriptome	388	Y
F020085	Metagenome / Metatranscriptome	226	N
F044717	Metagenome	154	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334913_003450_149_553	F005860	N/A	MSEATPMPAEPPPPSAQQLAQWRALIERIRQGDRSQVVPWEKVAAADTGAAYQVLVTHRVRQQLRDAPPFLVDYAAGVMAVLRVDPTQASTIFRRRRLWDAGWTVTFGAAHGLLTYGLMQPEQLVVLLDLNWAG
Ga0334913_003450_3795_4028	F044717	GGAG	MTISVNEQVAGHKVTVRPAARATRGHRRASCQSGWQSRIGSTEQVMPQIRTHLEAALAATQPPVEPPAKPSSRSFRR
Ga0334913_003450_840_1289	F020085	AGGAGG	MSRSTDDLTRSELRAIRGHYRRRVYLAFLIPAVIAVALGWLLFQERTAQSGEPPPATPRTTISGPITKEVVSQNCVAALKQASTMLDRAAQALKDWRLHAKALTDYQEGRISLAEARRRWAKTTKVGLAGADRFDKQAEVYKKAATTCK