Scaffold Ga0334913_001418

Overview

Basic Information

• Taxon OID: 3300034172
• Scaffold ID: Ga0334913_001418
• Source Dataset Name: Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 9HMS
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9052
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (69.23%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 34.7856
  • Long. (^o): -115.66

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044807	Metagenome / Metatranscriptome	154	Y
F081908	Metagenome / Metatranscriptome	114	Y
F084448	Metagenome / Metatranscriptome	112	Y
F085650	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334913_001418_1837_2169	F085650	GGGGG	LSDDAQLTDRLVRLVAIVLFLKVAGFLVLAASATVREVPGRGLAVTLVLAAAMAGVAVGLLQSRRWAWPLALTVLMADALIVGGLLRLLIDVGLALVLFQPRVRTRFGLR
Ga0334913_001418_5426_5572	F081908	AGGA	LLCVLAHYGGLDETAIIWVPLVMIGGLWWLLRGGDPKQEDEPPREETR
Ga0334913_001418_5569_5895	F084448	GGAGG	MSNFAEGLFPGWLSFLMLLPFIMLGFGLWFICRAFSDRGDARQPDPEARARVVVLPDRAQRPLYHVHQQIQASARPPPKPGPDEPERGPGGRGRRPRHHSTTRLELRQ
Ga0334913_001418_6111_6578	F044807	N/A	MGLFMMLASATWGHAGVFTPFYRIAGVLDRAAYDVSLEEAAGGSRFWLEPQTALPGACVHLGLAGFFGMVFVLLARGRPGARPGGLVLAGAAWGLAVAVAMVPVLRLVGGSVGGGDLIAEVPARLGWPTYVGMHLVYGLALGAVVAWRATRRAHA