Scaffold Ga0370480_0048197

Overview

Basic Information

• Taxon OID: 3300034169
• Scaffold ID: Ga0370480_0048197
• Source Dataset Name: Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_02D_15
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1485
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil → Peat Soil Microbial Communities From Wetland Fen In Alaska, United States

Source Dataset Sampling Location

• Location Name: USA: Alaska
• Coordinates
  • Lat. (^o): 64.9142
  • Long. (^o): -147.835
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F086687	Metagenome	110	Y
F105437	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0370480_0048197_277_792	F086687	GGAG	LKPWILNKRVNTLTSQLADSSKTETTIDWNCLSEPERELLTKVDEIIKQYSPAKPPIDIIEKYADLWYKGLEIFGRRATELFVEVVPDSLCCDELETWYFKLYFHNFLLDWMESIQKIREMPKEQLDALIAERREMGLLDRVFRLKRYQPQHKIKAVRSINNEALTINKKN
Ga0370480_0048197_761_1204	F105437	AGGAG	MKPSQLTKRIEELSEKLKPVSSEGIRIDFNSFTEPERLVLLKNFELDEKYRGKWTHETIMENKALILKFNHIVISRLIELFQHAMPGALMLDELDAWFFNFNFNDFWRRWIECQKNLNKWSKKDREDFLRDIKLEPKTVKKVNVRLN