Scaffold Ga0335061

Basic Information
Taxon OID	3300034168 Open in IMG/M
Scaffold ID	Ga0335061_0039378 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME06Apr2016-rr0183
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034168 Open in IMG/M

Scaffold ID

Ga0335061_0039378 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME06Apr2016-rr0183

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2530
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

2530

Total Scaffold Genes

5 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008619	Metagenome	330	Y
F014737	Metagenome / Metatranscriptome	260	Y
F023109	Metagenome / Metatranscriptome	211	Y
F085345	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335061_0039378_1427_1873	F023109	N/A	MIRPATRYDIPRLLEIVEAYAYENPIKKLGEPCNHFPRYVEELLFSIMQGRGFIYVDSHLRGAIVAYKTSNIWSPKVKELNELLWWVEPEHRNGTVGGRLWKAFDERAKEMLKAGDVDIVCTSISANGPLIDYTRRGYKSLSATFVRE
Ga0335061_0039378_1877_2530	F085345	GGA	MVATLIAGLEVIGFSTAMATFAVNFAISYVVTRAFADNPETQQDMGVRQQVPPSAVNAIPIVYGNAYMGGTFVDAVLTTDQKTMYYVLAISSISPNGQFTFDTADMYYGDRKITFDGSDLTKVVSLTDEAGNVDTKISGNLYINLYTSTTGGTITSANGASAPSTVMGGSDIVVGQRWTGTRQMNGLGFAIVKLIYNRDADSTQLQPITFKVAHTLTG
Ga0335061_0039378_190_786	F008619	AGG	MSFQTIFNIQQSMTVNNRRMVGQQVARSGYITVAQYLTAVPWVFTITPHAYLYYPQVRDVIQTIDNLDRQLPEYITFTGANLGWFTEMRGTATTATLNGAPAANTQTLALTSNGTFKAGDFIMVGGYVYKVTADSAGSSVSINRPLIGNPASGATVLLGNNVSFNVVAESCPTYTLNPMTDGAFVQWDAPFVFREYIT
Ga0335061_0039378_783_1430	F014737	GAG	MTTINAVNGSQINHAEFVKLTVGTAATVYTFCNAAAPITVGGITFSNLGALLSVGDVQRDIKATSDDMTIALTGIDPTNVALILSSDIKGSLVEVWRGFFDSNNQIITTPTTQFFKRYQGIINSVSITEDFNSEARTRIATCSISCSSMRRVLENRLSGVKTNQNNWQFIYAGDTSMNRVSEISNTFFDFGSPPKTQTQASETTVTDNSAGDASP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335061_0039378

Overview

Ecosystem & Geography

Associated Families

Sequences