Scaffold Ga0335061_0021778

Overview

Basic Information

• Taxon OID: 3300034168
• Scaffold ID: Ga0335061_0021778
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME06Apr2016-rr0183
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3407
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000331	Metagenome / Metatranscriptome	1285	Y
F096670	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335061_0021778_1181_1630	F000331	AGGA	MMPTSELVMADSVEPADIDTFIDNAAWAIRSTYHTVLKASPGAAIFGRDMLFDIPFVADWKQIGDYRQHQTDRSNKRENNKRVDCDYKVGDKILIRKDGILRKAESIWKKEPWTITTVHTNRTIRIQCGTKSERINIWRVTPFSEELLI
Ga0335061_0021778_27_416	F096670	N/A	MLWGQHIVYNDHTNLTRDGLGLTSDRVTRWRILLEEYATEIIYIKGIHNTVADAISRLDYDPKLNSTNEYNHAMHVRSVKEEAHQKWSMCSKFWSRYNEKQGDTDECNTIQLNQCFANRNEEDEIYPIQ