NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335017_0092773

Scaffold Ga0335017_0092773


Overview

Basic Information
Taxon OID3300034167 Open in IMG/M
Scaffold IDGa0335017_0092773 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Apr2015-rr0082
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1779
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024717Metagenome204Y
F034061Metagenome175N
F048156Metagenome / Metatranscriptome148N

Sequences

Protein IDFamilyRBSSequence
Ga0335017_0092773_2_466F048156N/AMNLLKTIIERLNQRVEVANIFDKQFGLCELNANGNDKAWVHYIGNGQAEVVTNFDAKQGTLFWAKRGKVTVVKTDAYKMSGCKQLYVTSFPLTAYAVVRKSHLPCDGDDAQDWLASRIYKLTSGTDPLFKQNLGVINYEVIPSGYINEIKTLTAN
Ga0335017_0092773_463_924F024717N/AMATPKEISDRINALFSDWNSGFTPLSFAVQDMRREMYIRIFGIDTGRGQNQAGNFLPTKPYTKAYAKIKAANGKPPLELTGFLKRSFATDQTTVVTEGFDTAIYTVADEAGKVAGLEKLYGTIFKPTAEEQSRMLQLHADLLVEQISNQISKP
Ga0335017_0092773_924_1754F034061N/AMMKADTVVESKRIGQVVTNSSNVDVAVGAGKFTGIRVKIDPNTESFLNFYLSNFQIDIYTMATPVEIFVYDMSTLKLIDSFFYQSEAVEQFIGKTFKANRRKLDLAFVYESLYDTTKMIPKKGSCTDCGGNLRAVHMCPFVDAIGIELTTDGFNVLSSKAKKYTQGMSMVYNVNCDREAWLCSIGGLMAMPLAYATAVEIYNYGLTISPNQRVNTTVSVNTGFATSDPNDGMIAGRDIAATRYSEELTAMLQNMRLPSDNTCFDCRRNMKYVTALP
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