NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335017_0063348

Scaffold Ga0335017_0063348


Overview

Basic Information
Taxon OID3300034167 Open in IMG/M
Scaffold IDGa0335017_0063348 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Apr2015-rr0082
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2182
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000211Metagenome / Metatranscriptome1583Y
F005772Metagenome390Y

Sequences

Protein IDFamilyRBSSequence
Ga0335017_0063348_106_312F005772N/AMYDIDVGCSLKGSTASVRVYWDHFHTDIIYDFSQLSQIWGKLCGGNGMNVLSHPHPQLFKVLKHLIYE
Ga0335017_0063348_350_514F000211N/AMSYIYKVFEHLKQMWMGIWQHTHIVTTTDISPDLGEFAEILNDVSVEMIPLRYR
Ga0335017_0063348_946_1110F000211N/AMSYIYKVFEHLKQLWMGIWQHTHTITTTEVSPDLGEFTEILDDVSAELIPLCYR
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