Scaffold Ga0335017_0054884

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0335017_0054884

Scaffold Ga0335017_0054884

Overview

Basic Information
Taxon OID	3300034167 Open in IMG/M
Scaffold ID	Ga0335017_0054884 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Apr2015-rr0082
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2352
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F024000	Metagenome / Metatranscriptome	208	Y
F056331	Metagenome / Metatranscriptome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335017_0054884_1473_2351	F024000	AGG	VRKLRTAPPGEKPAEKTVRLEQLKDAVDKLVKANVHEDAKLEIVYELFRKTLKEDPELQWDRIVSDMHTKDPWEDLKGAKHDGIRGKSSKSLWECIDFHKCTIYSINAAEQQRLNILCHLKKPAKSSIRAHVTRMETLNKYLEQLPTIKNSPMAVASTEYGNVPFNESTLASIILSHLPVAWRNQYNLTHTIVPESPRAILLDLENLEKVFAKRSNEAARANKAKVAAAAKSAGDHVPRKGKRAHGGGPDKGNPKKGRTDKFCKWCKAVDGPFTTHNTIECRRFNKDGSQKDR
Ga0335017_0054884_566_775	F056331	GAG	MYVLCVLCVFLHATVACGTELLDVLGIKICVATLVQESTYLRSSHGSRRRSASRYLPRTCVRDTHYYNA

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