Scaffold Ga0335017_0009605

Overview

Basic Information

• Taxon OID: 3300034167
• Scaffold ID: Ga0335017_0009605
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Apr2015-rr0082
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5347
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (76.92%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005344	Metagenome	403	Y
F005503	Metagenome / Metatranscriptome	398	Y
F007799	Metagenome	344	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335017_0009605_1582_2247	F007799	AGGTGG	MSFLDNYEDVAARIQRFWATYPTGKIHTSIMDVNLEKGYVLVECRIYRNYEDQEPAGIDYAFGNVNTYNVQMKKWFIEDTCTSAIGRCAGLVLGTDKRPTVQNMQQIERIDPKIVQDAAVAYDYWNTKHGDVPSFKTREEAEEAGIPTLGVAIDTIKETLGGVQVAAAPLCSHGHMIWREGTSAKTNKGWGGYMCSEKIKAKQCPPAWYMLGSDGQWRPQV
Ga0335017_0009605_2244_2405	F005503	GGAG	MTSGEIGLFLFMCLACILWAIVSYTMGYKEGHKEGYQRGRAVGRHASSQVVAK
Ga0335017_0009605_4808_5347	F005344	N/A	ALGQGITIKTRAGDVRNDITISYGQNSSNQVSDTDPASIALYGDLSQIFTTTLRHSHDAVDQAAFYLALRAYPQPIFDSITYALTNPELDNGDRDDLINIFMGQPIALNDLPPNMSSGTFQGFVEGWTFRASYNQLDITLFMSPLAYSLQAMRWNDVPINERWNTVSPTLEWQYATIVS