Scaffold Ga0335017_0003790

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0335017_0003790

Scaffold Ga0335017_0003790

Overview

Basic Information
Taxon OID	3300034167 Open in IMG/M
Scaffold ID	Ga0335017_0003790 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Apr2015-rr0082
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	7922
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F014737	Metagenome / Metatranscriptome	260	Y
F023109	Metagenome / Metatranscriptome	211	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335017_0003790_4938_5384	F023109	AGGA	MIRPATRYDIPRLLEIVEAYAYENPIKKLGDSCNHFPRYVEQLLFEIISGRGFIFIDSNLRGAIIAYKTSNIWSPKIKELNELLWWVEPEHRNGTVGGRLWKAFDERAQAMLKAGDVDFVCTSISANGPLIDYTRRGYKPLGATFVRE
Ga0335017_0003790_5381_6025	F014737	GAG	MTTINAVTGYQINHAEFVKLTVGTAGTVYTFCNAAAPITVGGITFSNLGALLSVGDVQRDIKATSDDMAIQLTGINPSNVALILSNDIKGSLVEVWRGFFDSNNQIITTPTTQFFKRYQGIINSVSITEDFNSEARTRIATCSISCSSMRRVLENRLSGVKTNQNNWQFIYSGDTSMNRVSEISNTFFDFGSPPKTNTQSSDTTVTDTGYVDPP

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