NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335017_0001915

Scaffold Ga0335017_0001915


Overview

Basic Information
Taxon OID3300034167 Open in IMG/M
Scaffold IDGa0335017_0001915 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Apr2015-rr0082
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10493
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (61.11%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007466Metagenome350Y
F028163Metagenome192N
F030695Metagenome184Y

Sequences

Protein IDFamilyRBSSequence
Ga0335017_0001915_1276_1485F028163GGAMAAASMSRVTEMIDVDTMIGRTLIDGKIVAEFKCEQCDHCQRIEILDRAGYQRDVSGEPILWFCGKCRK
Ga0335017_0001915_4243_5490F007466AGGMTQWAPVWRVEIAGVDVTDSVLANLTITSGRTNIYEQAQAGYCSVNLIIFNQAALPYEINDTISIEVQDTSAVYVPIFGGSIVDISVSVSQVGSTAYTQEVTITALGALARLQKALTDGVLTQDFDGNQIETILREVLLTQWQQVPAALQWTTYDPTTTWATVTNNGLGEIDTPGNYELAQRSSNRTIIYDLVAALATSGLGYLYESASGLISYADSTHRTTYLAANGYTDLTANHALGQGITIKTRAGDVRNDITISYGISSGSEVSDTDPASIAIYGDLSQIITTTIKHKADAEDQAAFYLALRAYPQPIFDSITYALTNPELDNADRDALINIFMGQPVALNDLPPNMSSGTFQGFVEGWTFRASYNQLDITLLMSPLAYSLQAMRWNDVPINEQWNTVSPTLEWQYATIVS
Ga0335017_0001915_8740_9360F030695AGGAMPAIITVASLRQVIGVSVSLYSNDYLESIIDSAEQVILPLLTANQNSVAAVYLQNNVAYYITQKPNTFVAGQSVVITGCVPNTFNGTLTVTSNYYDPFPYLPFAYPAPYFYFTAAITNSDITFRPVIPGGVVYLSGADAATLYANTDAVEQAVTIVSVEIFQSVVAPGGQIEGVDFAPSPFRMGRSLQNRVIGLLGNYVDVSTMAM
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