Scaffold Ga0335017_0000935

Overview

Basic Information

• Taxon OID: 3300034167
• Scaffold ID: Ga0335017_0000935
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Apr2015-rr0082
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14475
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (68.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002433	Metagenome / Metatranscriptome	559	Y
F007466	Metagenome	350	Y
F011152	Metagenome	294	Y
F016529	Metagenome	246	Y
F029109	Metagenome	189	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335017_0000935_102_1349	F007466	AGG	MTQWAPVWRVKIDGADVTDSVIANLTITSGRTNIYTQAQAGYCSITLIIFGQAALPYEINNSLSIEVQDTSAVYVPIFGGSVVDISVSVSQVGSSAYTQEVTITALGALARLQKALTDGVLTQDFDGDQIETILREVLFAQWQQVPAALQWNTYDPTTTWANAGNTGYGEIDTPGNYELAQRASDRTVVYDLVAALATSGLGYLYEDAQGLISYGDSTHRTTYLALNGYTDLTANQALGQGITIKTRAGDVRNDLTIKYGTNSSNEVSDTDEASIGLYGDLAQIITTTIKHAADASDQAAFYLALRAYPQPIFDSITYALTNPELDNADRDALINIFMGQPIALNDLPPNMSAGVFQGFVEGWTFRASFNELAITLLMSPLAYSLQAMRWNDVPIVEQWNTVSPTLTWEYATIVS
Ga0335017_0000935_12300_12845	F029109	GGAG	MAYKATKGQGTFRIEVEPVALKNLISTLNLLDKESQNRVRDAATPLSKRLAGQIMMFGHSSPTPQTALVLQSITTPRDRLIRVDVGGPKKVGRAYGGRPSKSGKGAKVGRTQAPAGALLWGSEYGSEPGVDRAGRAYTNRFKVPRRREGYWLNPAVEFYTPVVAAEYISIVTGIINDLEL
Ga0335017_0000935_3067_3264	F002433	N/A	VNVGEWTAVGGLVIAVLTAIYSSMRFMVKSIMRELQPNGGNSLKDQVSRIEQRLDQLMLEIALKK
Ga0335017_0000935_4306_4797	F011152	AGG	MIKMHMSAADEWAIHERASHVVFATDGNLGTVQYYNKLNNFERVVEYAESIAAELCVARYFGLDFDISASQGKRNADVGKGIEVKWTAYVGGNLIISPADRESDVAVLVVGKSPEYFIAGWLPVSFAKRKRFKNPRQDTWWVDQGNLNPIENLTRSEYAATAI
Ga0335017_0000935_4778_4954	F016529	GGAG	MQRLQFDCPICAKLYGDGRKMHGLTKGAELTLNEWFAQCSGCGAFSIKIIDDQMVNGQ