Scaffold Ga0335017_0000753

Overview

Basic Information

• Taxon OID: 3300034167
• Scaffold ID: Ga0335017_0000753
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Apr2015-rr0082
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15962
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (42.11%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira oceanica (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F057117	Metagenome / Metatranscriptome	136	Y
F098700	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335017_0000753_11346_11948	F098700	N/A	MEAPIVFSDPNNMAGILINNLIMEEDIARQRSPLDSKIYAEMLRRLNISCSPDLEQHTLFDVTTIGHYLGPRVSECAQTTDKNVDYHVYPSGKQVIKAFIANVFQIIDVNGQVITGLSDASIEHVDGVRITWHIQKNCQNNQKITLPCDKTNPTICPILAALRLVLRACRLSQPDSMPVACYLKKDAMAYITGSRITFHF
Ga0335017_0000753_7899_8180	F057117	AGCAG	MKASDVFPKGMAELVCVDFTCKDRECTRENCAHLHPRKGSDLNKETVNAIGDHFLEKRVGWFNKWHFLKILGELPDKIKALMGGKDGRSSKKD