NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335016_0373273

Scaffold Ga0335016_0373273


Overview

Basic Information
Taxon OID3300034166 Open in IMG/M
Scaffold IDGa0335016_0373273 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Sep2012-rr0079
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)843
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016958Metagenome / Metatranscriptome243Y
F040535Metagenome / Metatranscriptome161Y

Sequences

Protein IDFamilyRBSSequence
Ga0335016_0373273_692_838F040535N/AMLNLSYVVEKEGNLVSVVDRLMLSEYQINDLMDSLVSHGYDVVEMSVR
Ga0335016_0373273_84_245F016958N/AMAGNTSTMDLPTKEDVYYFIDLYKTSLKRNQRVKITCDLLGIDGYLQGTKPIR
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