Scaffold Ga0335016_0195040

Overview

Basic Information

• Taxon OID: 3300034166
• Scaffold ID: Ga0335016_0195040
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Sep2012-rr0079
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1328
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023330	Metagenome	210	Y
F036662	Metagenome	169	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335016_0195040_752_997	F023330	GAGG	MMNEENDVVKEIRELLHPTDYTHAMDLRGESIGDVCVCGGDVFHALVAFDQGELCFYFLDGECVNCGSMVTLPYPKNEDII
Ga0335016_0195040_978_1328	F036662	N/A	LPSIIAESYEIPTKIKDLNFKFNKSETANDGNNWLVLRSDIAAAYYKLSEAKQFILKVRFTVDNVEWSETAKELNTTPDGARMKVQRTIASLIRNLGGWKPQSDEDLVEVDDERGE