NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335016_0151180

Scaffold Ga0335016_0151180


Overview

Basic Information
Taxon OID3300034166 Open in IMG/M
Scaffold IDGa0335016_0151180 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Sep2012-rr0079
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1580
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010317Metagenome / Metatranscriptome305Y
F027823Metagenome / Metatranscriptome193Y

Sequences

Protein IDFamilyRBSSequence
Ga0335016_0151180_342_635F010317N/AMKSIYIEKLAEVPGGLPARNMEEHIDGQYQGDSHSIPIEYNLEGVLSYDIEVGKPVVVGRTKRNGVEAYGVFSTSRVTEVGNNYFKTKNSVYSYKFL
Ga0335016_0151180_632_982F027823N/AMNITAAKDVPCVSQTNLWKGCFEAHFMSGREIDVKYPILNTKWKYSHHKLRDVYDYYDGYYYAYEKDIGTGIMFDPWLREFKVNMSIADDVYKTKMYHTTVESNPILLVLYKKKYV
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