NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335016_0106245

Scaffold Ga0335016_0106245


Overview

Basic Information
Taxon OID3300034166 Open in IMG/M
Scaffold IDGa0335016_0106245 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Sep2012-rr0079
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2004
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001229Metagenome / Metatranscriptome741Y
F001900Metagenome / Metatranscriptome620Y
F007688Metagenome / Metatranscriptome346Y

Sequences

Protein IDFamilyRBSSequence
Ga0335016_0106245_1040_1438F001229N/AMYLDVYKQNETQDADTGAIVREWSYYKTVSCHAKGVISNSATTRSSDKQIFSNKYLNDQIIQVRTSERLTPREKVTNIRDNEGNVIWHEINFPNETPTVFEVMGTTPVTDPFGRVIAYNSSMKRSENQQIGQ
Ga0335016_0106245_2_271F007688GGAGGMTANYKLDAMLELRKYLWKQLYTRNIFDENDYWSDNLNENIVPIIPVQQSAEMNQFLSGKKHIVYDKIGMSYEDNWLICCEQILFTLYST
Ga0335016_0106245_268_999F001900GAGMYENRKGVLKDSTVAQVSAYVYYSASVISKLTTNKQFKHAFTTVIFEQIDKDFGEYIDALARTRPKSLHHVYEWNKAGNKSSRLFKLNKLSENGLSFRVNYEFKPSRSLVPSETSRRRHMFINKAEVMERGIPLTIRPKNAERLVFEYNGETVFMPKGASVTVRRPGGSAATNQFNLAHSRFFSGQLVNSSIRKSGFQRLFNSSMTKALSVPSNIKKVQYSFTANTIRSQADSELSLAFGGAL
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