NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335016_0093215

Scaffold Ga0335016_0093215


Overview

Basic Information
Taxon OID3300034166 Open in IMG/M
Scaffold IDGa0335016_0093215 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Sep2012-rr0079
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2185
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003659Metagenome / Metatranscriptome474Y
F030991Metagenome / Metatranscriptome183N

Sequences

Protein IDFamilyRBSSequence
Ga0335016_0093215_1162_1350F030991N/AMILKYLGCDKKYFRYELYDGDRMELYVETKLSARATAKLLFCNFGIKDIALKIYNRTYGLKT
Ga0335016_0093215_1837_2184F003659N/AMPQTLTAADVVGRYLIAKKDVPVYDAPFGTRIGTIKKGNSTPEVYSYLVRQGQVFWVFDYTIPGQTPSAYYALQSPDAFSLSSVPGNVAIAPNVLPSVDVFPAGGIKKYAIFGALG
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