Scaffold Ga0335016_0071945

Overview

Basic Information

• Taxon OID: 3300034166
• Scaffold ID: Ga0335016_0071945
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Sep2012-rr0079
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2586
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007029	Metagenome / Metatranscriptome	359	Y
F029049	Metagenome / Metatranscriptome	189	Y
F066777	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335016_0071945_1048_1557	F029049	N/A	MSRVAKVVLDRSQEITAHRVGLERTITRNAEIQDASNFGQVYKNWHELVWQESEAAAAEIAVANYFGDYGFVPSIDNAHDTADVGENIEVKWTKHTNGHLILQNRGPGRPTDVAILVTGFSPVYVLLGWMPVHMAKVPKYKHPYQNNYWVPRSNLFEMQYLKRSNYGDV
Ga0335016_0071945_196_804	F007029	GAG	MSFLDNYEDVNSRIKRFRAEFPSGRLVAFIENFDIEKGTILVRAEAYREYEDTVPSAVDYAFGNVNTYPQNMRKWMVEDTITSSYGRVIGLLSPSEGGRPTRQDMEKVETLPASADPWSTKASIEDMATMASSVLEIATQLGGELVAEAPRCSHGTMVWAEGTAKATGKPWAAYKCTERVRSNQCNPYWHVLGSDGKWKPQV
Ga0335016_0071945_875_1060	F066777	GGCGG	MGELTFIKDGLATTIHDNGDMTVVAAKQCDECFKWHTEMGGFSVRDVSGEVVLWLCAQCR